Welcome to BioConductor bioconductor.org
Science, Biology, Bioinformatics, Software - Bionconductor. The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
https://www.bioconductor.org/
Main Page - BioJava
Science, Biology, Bioinformatics, Software - BioJava.org. The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
https://biojava.org/
Bioperl.org
Science, Biology, Bioinformatics, Software - Bioperl.org. The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.
https://bioperl.org/
Gints
Science, Biology, Bioinformatics, Software - Gints. Object-oriented regulation network simulator written in Java.
http://gints.free.fr
Freeware DNA cloning, analysis and visualization software.
Scientific software for the molecular biologist. Performs virtual DNA cloning, analyses DNA for restriction enzymes, homing enzymes and primer sites, dam and dcm methylation sites, finds and translates open reading frames. Calculates annealing temperatures for PCR. Generates DNA/plasmid plots, virtual agarose gel plots, XY-homology plots - and more!
http://www.acaclone.com
WU-BLAST Archives
Science, Biology, Bioinformatics, Software - WU-BLAST Archives. WU-BLAST: The Washington University BLAST.
http://blast.wustl.edu/
Phred/Phrap/Consed System Home Page
Science, Biology, Bioinformatics, Software - Phred/Phrap/Consed System Home Page. basecaller / assembler / sequencer finisher and related tools from the UW Genome Center.
http://www.phrap.org/